Fitness problem in genetic algorithm using python












0















I created code that uses genetic algorithms.But there is a problem with def fitness and def max_fitness. I want to make a function that returns a small value of the result value from def fitness part, but I do not know how to do it.
It seems to be using it incorrectly because I can not understand @staticmethod and @property. I really appreciate it if you let me know.



def random_chunk(li, min_chunk=1, max_chunk=9):
# random.shuffle(li)
it = iter(li)
while True:
nxt = list(islice(it,randint(min_chunk,max_chunk)))
if nxt:
yield nxt
else:
break

def countChar(char, list):
return [k.count(char) for k in list]

def sumOfList2(v_list,we):
result =
for item in v_list:
log2 = math.log(float(item + 1), 2)
MC_k = we * item * (2*log2)
result.append(MC_k)
return sum(result)


def rand(x,y): return int(uniform(x,y))
mutation_probability = 10
DNA_CNT = 5

dd = [['1,2', 1], ['1,3', 0],['1,4', 1],['1,5', 0],['2,3', 1],['2,4', 0], ['2,5', 1],['3,4', 0],['3,5', 1], ['4,5', 1]]
cha = dict(dd)
Data= cha.values()
# print Data
# print cha


class Generation:



cnt = 0
def __init__(self,dna_list):
Generation.cnt += 1
self.generation_level = Generation.cnt
self.DNA_list = dna_list
self.select_list = self.make_select_list()

def __repr__(self):
return "<Generation level %d>" % self.generation_level

def make_select_list(self):
tmp_list = list()

for dna in self.DNA_list:
tmp_list += [dna for _ in xrange(int(dna.fitness))]
return tmp_list

def make_child(self):
if rand(0, self.fitness * mutation_probability) == 0:

return DNA([random.randint(0,len(Data)) for _ in xrange(len(Data))])

parents = tuple(self.select_list[rand(0, len(self.select_list))] for _ in range(2))

gene_data = list()

gene_len = len(parents[0].gene_data)

switch_point = (rand(1, gene_len //2), rand(gene_len //2 ,gene_len))

parent = parents[0]

for _ in xrange(gene_len):
gene_data.append(parent.gene_data[_])

if i in switch_point:
try:
parent = parents[parents.index(parent) +1]

except IndexError:
parent = parents[0]

dna = DNA(gene_data)
return dna

def evolution(self):
print("Start Evolution Generation level %d" % Generation.cnt)

dna_list = [self.best for _ in xrange(DNA_CNT)]

dna_list += [self.make_child() for _ in xrange(len(self.DNA_list) - len(dna_list))]

return Generation(dna_list)

@property
def fitness(self):
# print mean([dna.fitness for dna in self.DNA_list])
return mean([dna.fitness for dna in self.DNA_list])

@property
def best(self):
return sorted(self.DNA_list, key=lambda x: x.fitness, reverse=True)[0]


class DNA:



def __init__(self, gene_data =None):
if gene_data is None:
self.gene_data = [rand(min(Data), max(Data) + 1) for _ in range(len(Data))]


else:
self.gene_data = gene_data


def __repr__(self):
return "<Gene %s | %d>" % ("_".join(str(x) for x in self.gene_data), self.fitness)

@staticmethod
def max_fitness():
if max(Data) < 2 :
return len(Data) * max(Data)
else:
return len(Data) * (max(Data) // 2)

@property
def fitness(self):
sum_ =
k=
sum1 = 0
minn = 1
score = DNA.max_fitness()
# print self.gene_data
aa = self.gene_data.count(1)
if aa == 6:
a = (list(random_chunk(self.gene_data)))
# print a
for _ in a:
if len(_) == minn and _[0] == 1:
out_1 = sumOfList2(_, 0.3)
sum1 += out_1


find_0 = countChar(0,a)
in_0 = sumOfList2(find_0, 0.3)

result = sum1 + in_0
print result
# print chrom
# print aa
# if aa == score:
# return aa

return score


if __name__ == '__main__':
Generations = list()


Generations.append(Generation([DNA() for _ in range(100)]))

i = 0

while True:
try:
next_generation = Generations[i].evolution()
Generations.append(next_generation)

print("Fitness: %d" % next_generation.fitness)
print("Best DNA: %s" % next_generation.best)


if next_generation.fitness >= DNA.fitness():
break
i = i+1

except KeyboardInterrupt:
break

print("Last Generation's Best DNA: %s" % Generations[-1].best)

# visualization(Generations)









share|improve this question



























    0















    I created code that uses genetic algorithms.But there is a problem with def fitness and def max_fitness. I want to make a function that returns a small value of the result value from def fitness part, but I do not know how to do it.
    It seems to be using it incorrectly because I can not understand @staticmethod and @property. I really appreciate it if you let me know.



    def random_chunk(li, min_chunk=1, max_chunk=9):
    # random.shuffle(li)
    it = iter(li)
    while True:
    nxt = list(islice(it,randint(min_chunk,max_chunk)))
    if nxt:
    yield nxt
    else:
    break

    def countChar(char, list):
    return [k.count(char) for k in list]

    def sumOfList2(v_list,we):
    result =
    for item in v_list:
    log2 = math.log(float(item + 1), 2)
    MC_k = we * item * (2*log2)
    result.append(MC_k)
    return sum(result)


    def rand(x,y): return int(uniform(x,y))
    mutation_probability = 10
    DNA_CNT = 5

    dd = [['1,2', 1], ['1,3', 0],['1,4', 1],['1,5', 0],['2,3', 1],['2,4', 0], ['2,5', 1],['3,4', 0],['3,5', 1], ['4,5', 1]]
    cha = dict(dd)
    Data= cha.values()
    # print Data
    # print cha


    class Generation:



    cnt = 0
    def __init__(self,dna_list):
    Generation.cnt += 1
    self.generation_level = Generation.cnt
    self.DNA_list = dna_list
    self.select_list = self.make_select_list()

    def __repr__(self):
    return "<Generation level %d>" % self.generation_level

    def make_select_list(self):
    tmp_list = list()

    for dna in self.DNA_list:
    tmp_list += [dna for _ in xrange(int(dna.fitness))]
    return tmp_list

    def make_child(self):
    if rand(0, self.fitness * mutation_probability) == 0:

    return DNA([random.randint(0,len(Data)) for _ in xrange(len(Data))])

    parents = tuple(self.select_list[rand(0, len(self.select_list))] for _ in range(2))

    gene_data = list()

    gene_len = len(parents[0].gene_data)

    switch_point = (rand(1, gene_len //2), rand(gene_len //2 ,gene_len))

    parent = parents[0]

    for _ in xrange(gene_len):
    gene_data.append(parent.gene_data[_])

    if i in switch_point:
    try:
    parent = parents[parents.index(parent) +1]

    except IndexError:
    parent = parents[0]

    dna = DNA(gene_data)
    return dna

    def evolution(self):
    print("Start Evolution Generation level %d" % Generation.cnt)

    dna_list = [self.best for _ in xrange(DNA_CNT)]

    dna_list += [self.make_child() for _ in xrange(len(self.DNA_list) - len(dna_list))]

    return Generation(dna_list)

    @property
    def fitness(self):
    # print mean([dna.fitness for dna in self.DNA_list])
    return mean([dna.fitness for dna in self.DNA_list])

    @property
    def best(self):
    return sorted(self.DNA_list, key=lambda x: x.fitness, reverse=True)[0]


    class DNA:



    def __init__(self, gene_data =None):
    if gene_data is None:
    self.gene_data = [rand(min(Data), max(Data) + 1) for _ in range(len(Data))]


    else:
    self.gene_data = gene_data


    def __repr__(self):
    return "<Gene %s | %d>" % ("_".join(str(x) for x in self.gene_data), self.fitness)

    @staticmethod
    def max_fitness():
    if max(Data) < 2 :
    return len(Data) * max(Data)
    else:
    return len(Data) * (max(Data) // 2)

    @property
    def fitness(self):
    sum_ =
    k=
    sum1 = 0
    minn = 1
    score = DNA.max_fitness()
    # print self.gene_data
    aa = self.gene_data.count(1)
    if aa == 6:
    a = (list(random_chunk(self.gene_data)))
    # print a
    for _ in a:
    if len(_) == minn and _[0] == 1:
    out_1 = sumOfList2(_, 0.3)
    sum1 += out_1


    find_0 = countChar(0,a)
    in_0 = sumOfList2(find_0, 0.3)

    result = sum1 + in_0
    print result
    # print chrom
    # print aa
    # if aa == score:
    # return aa

    return score


    if __name__ == '__main__':
    Generations = list()


    Generations.append(Generation([DNA() for _ in range(100)]))

    i = 0

    while True:
    try:
    next_generation = Generations[i].evolution()
    Generations.append(next_generation)

    print("Fitness: %d" % next_generation.fitness)
    print("Best DNA: %s" % next_generation.best)


    if next_generation.fitness >= DNA.fitness():
    break
    i = i+1

    except KeyboardInterrupt:
    break

    print("Last Generation's Best DNA: %s" % Generations[-1].best)

    # visualization(Generations)









    share|improve this question

























      0












      0








      0








      I created code that uses genetic algorithms.But there is a problem with def fitness and def max_fitness. I want to make a function that returns a small value of the result value from def fitness part, but I do not know how to do it.
      It seems to be using it incorrectly because I can not understand @staticmethod and @property. I really appreciate it if you let me know.



      def random_chunk(li, min_chunk=1, max_chunk=9):
      # random.shuffle(li)
      it = iter(li)
      while True:
      nxt = list(islice(it,randint(min_chunk,max_chunk)))
      if nxt:
      yield nxt
      else:
      break

      def countChar(char, list):
      return [k.count(char) for k in list]

      def sumOfList2(v_list,we):
      result =
      for item in v_list:
      log2 = math.log(float(item + 1), 2)
      MC_k = we * item * (2*log2)
      result.append(MC_k)
      return sum(result)


      def rand(x,y): return int(uniform(x,y))
      mutation_probability = 10
      DNA_CNT = 5

      dd = [['1,2', 1], ['1,3', 0],['1,4', 1],['1,5', 0],['2,3', 1],['2,4', 0], ['2,5', 1],['3,4', 0],['3,5', 1], ['4,5', 1]]
      cha = dict(dd)
      Data= cha.values()
      # print Data
      # print cha


      class Generation:



      cnt = 0
      def __init__(self,dna_list):
      Generation.cnt += 1
      self.generation_level = Generation.cnt
      self.DNA_list = dna_list
      self.select_list = self.make_select_list()

      def __repr__(self):
      return "<Generation level %d>" % self.generation_level

      def make_select_list(self):
      tmp_list = list()

      for dna in self.DNA_list:
      tmp_list += [dna for _ in xrange(int(dna.fitness))]
      return tmp_list

      def make_child(self):
      if rand(0, self.fitness * mutation_probability) == 0:

      return DNA([random.randint(0,len(Data)) for _ in xrange(len(Data))])

      parents = tuple(self.select_list[rand(0, len(self.select_list))] for _ in range(2))

      gene_data = list()

      gene_len = len(parents[0].gene_data)

      switch_point = (rand(1, gene_len //2), rand(gene_len //2 ,gene_len))

      parent = parents[0]

      for _ in xrange(gene_len):
      gene_data.append(parent.gene_data[_])

      if i in switch_point:
      try:
      parent = parents[parents.index(parent) +1]

      except IndexError:
      parent = parents[0]

      dna = DNA(gene_data)
      return dna

      def evolution(self):
      print("Start Evolution Generation level %d" % Generation.cnt)

      dna_list = [self.best for _ in xrange(DNA_CNT)]

      dna_list += [self.make_child() for _ in xrange(len(self.DNA_list) - len(dna_list))]

      return Generation(dna_list)

      @property
      def fitness(self):
      # print mean([dna.fitness for dna in self.DNA_list])
      return mean([dna.fitness for dna in self.DNA_list])

      @property
      def best(self):
      return sorted(self.DNA_list, key=lambda x: x.fitness, reverse=True)[0]


      class DNA:



      def __init__(self, gene_data =None):
      if gene_data is None:
      self.gene_data = [rand(min(Data), max(Data) + 1) for _ in range(len(Data))]


      else:
      self.gene_data = gene_data


      def __repr__(self):
      return "<Gene %s | %d>" % ("_".join(str(x) for x in self.gene_data), self.fitness)

      @staticmethod
      def max_fitness():
      if max(Data) < 2 :
      return len(Data) * max(Data)
      else:
      return len(Data) * (max(Data) // 2)

      @property
      def fitness(self):
      sum_ =
      k=
      sum1 = 0
      minn = 1
      score = DNA.max_fitness()
      # print self.gene_data
      aa = self.gene_data.count(1)
      if aa == 6:
      a = (list(random_chunk(self.gene_data)))
      # print a
      for _ in a:
      if len(_) == minn and _[0] == 1:
      out_1 = sumOfList2(_, 0.3)
      sum1 += out_1


      find_0 = countChar(0,a)
      in_0 = sumOfList2(find_0, 0.3)

      result = sum1 + in_0
      print result
      # print chrom
      # print aa
      # if aa == score:
      # return aa

      return score


      if __name__ == '__main__':
      Generations = list()


      Generations.append(Generation([DNA() for _ in range(100)]))

      i = 0

      while True:
      try:
      next_generation = Generations[i].evolution()
      Generations.append(next_generation)

      print("Fitness: %d" % next_generation.fitness)
      print("Best DNA: %s" % next_generation.best)


      if next_generation.fitness >= DNA.fitness():
      break
      i = i+1

      except KeyboardInterrupt:
      break

      print("Last Generation's Best DNA: %s" % Generations[-1].best)

      # visualization(Generations)









      share|improve this question














      I created code that uses genetic algorithms.But there is a problem with def fitness and def max_fitness. I want to make a function that returns a small value of the result value from def fitness part, but I do not know how to do it.
      It seems to be using it incorrectly because I can not understand @staticmethod and @property. I really appreciate it if you let me know.



      def random_chunk(li, min_chunk=1, max_chunk=9):
      # random.shuffle(li)
      it = iter(li)
      while True:
      nxt = list(islice(it,randint(min_chunk,max_chunk)))
      if nxt:
      yield nxt
      else:
      break

      def countChar(char, list):
      return [k.count(char) for k in list]

      def sumOfList2(v_list,we):
      result =
      for item in v_list:
      log2 = math.log(float(item + 1), 2)
      MC_k = we * item * (2*log2)
      result.append(MC_k)
      return sum(result)


      def rand(x,y): return int(uniform(x,y))
      mutation_probability = 10
      DNA_CNT = 5

      dd = [['1,2', 1], ['1,3', 0],['1,4', 1],['1,5', 0],['2,3', 1],['2,4', 0], ['2,5', 1],['3,4', 0],['3,5', 1], ['4,5', 1]]
      cha = dict(dd)
      Data= cha.values()
      # print Data
      # print cha


      class Generation:



      cnt = 0
      def __init__(self,dna_list):
      Generation.cnt += 1
      self.generation_level = Generation.cnt
      self.DNA_list = dna_list
      self.select_list = self.make_select_list()

      def __repr__(self):
      return "<Generation level %d>" % self.generation_level

      def make_select_list(self):
      tmp_list = list()

      for dna in self.DNA_list:
      tmp_list += [dna for _ in xrange(int(dna.fitness))]
      return tmp_list

      def make_child(self):
      if rand(0, self.fitness * mutation_probability) == 0:

      return DNA([random.randint(0,len(Data)) for _ in xrange(len(Data))])

      parents = tuple(self.select_list[rand(0, len(self.select_list))] for _ in range(2))

      gene_data = list()

      gene_len = len(parents[0].gene_data)

      switch_point = (rand(1, gene_len //2), rand(gene_len //2 ,gene_len))

      parent = parents[0]

      for _ in xrange(gene_len):
      gene_data.append(parent.gene_data[_])

      if i in switch_point:
      try:
      parent = parents[parents.index(parent) +1]

      except IndexError:
      parent = parents[0]

      dna = DNA(gene_data)
      return dna

      def evolution(self):
      print("Start Evolution Generation level %d" % Generation.cnt)

      dna_list = [self.best for _ in xrange(DNA_CNT)]

      dna_list += [self.make_child() for _ in xrange(len(self.DNA_list) - len(dna_list))]

      return Generation(dna_list)

      @property
      def fitness(self):
      # print mean([dna.fitness for dna in self.DNA_list])
      return mean([dna.fitness for dna in self.DNA_list])

      @property
      def best(self):
      return sorted(self.DNA_list, key=lambda x: x.fitness, reverse=True)[0]


      class DNA:



      def __init__(self, gene_data =None):
      if gene_data is None:
      self.gene_data = [rand(min(Data), max(Data) + 1) for _ in range(len(Data))]


      else:
      self.gene_data = gene_data


      def __repr__(self):
      return "<Gene %s | %d>" % ("_".join(str(x) for x in self.gene_data), self.fitness)

      @staticmethod
      def max_fitness():
      if max(Data) < 2 :
      return len(Data) * max(Data)
      else:
      return len(Data) * (max(Data) // 2)

      @property
      def fitness(self):
      sum_ =
      k=
      sum1 = 0
      minn = 1
      score = DNA.max_fitness()
      # print self.gene_data
      aa = self.gene_data.count(1)
      if aa == 6:
      a = (list(random_chunk(self.gene_data)))
      # print a
      for _ in a:
      if len(_) == minn and _[0] == 1:
      out_1 = sumOfList2(_, 0.3)
      sum1 += out_1


      find_0 = countChar(0,a)
      in_0 = sumOfList2(find_0, 0.3)

      result = sum1 + in_0
      print result
      # print chrom
      # print aa
      # if aa == score:
      # return aa

      return score


      if __name__ == '__main__':
      Generations = list()


      Generations.append(Generation([DNA() for _ in range(100)]))

      i = 0

      while True:
      try:
      next_generation = Generations[i].evolution()
      Generations.append(next_generation)

      print("Fitness: %d" % next_generation.fitness)
      print("Best DNA: %s" % next_generation.best)


      if next_generation.fitness >= DNA.fitness():
      break
      i = i+1

      except KeyboardInterrupt:
      break

      print("Last Generation's Best DNA: %s" % Generations[-1].best)

      # visualization(Generations)






      python python-2.7






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      asked Nov 24 '18 at 10:47









      johnyjohny

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