how to cite in Rmarkdown chunk caption without using bookdown?












0














I am currently doing my thesis in Rmarkdown, and I have some citation I need in figure captions. I found a similar question in this page, yet the answer refers to the bookdown. In my case, I am using a .bib file.



My issue is that I have the thesis almost all written and the change to bookdown will probably bring errors which will be hard to debug now.



I have in the chunk:



{r yPlus, echo=FALSE, fig.cap="\label{fig:yPlus}Tipo de escoamento dado pela distânica à parede (adaptado de \cite{Versteeg:2007aa}).", fig.align="center"}


but when I run the Rmarkdown, I get [?] in the citation. I have tried citep as well, but it raises an error.



Is there a way to work around this issue without many complications? I am not very comfortable with all this yet.



Thank you all for the help.










share|improve this question
























  • You can change to bookdown with minimal interruption by using bookdown::pdf_document2 instead of pdf_document as output format. I would give this a try first.
    – Ralf Stubner
    Nov 20 at 20:07










  • Thank you, Ralf, for the suggestion. I have tried to perform the change, but it has started raising errors. I am afraid it will not be an easy change.
    – Sergio Cavaleiro Costa
    Nov 21 at 10:24










  • Great that you found a solution. Care to add it as an answer instead of comment?
    – Ralf Stubner
    Nov 21 at 12:01










  • I have made it figure out what was the problem. For further reference, I was referring to figures in the chunk using fig.cap="\label{foo} my caption". When I have passed all to the r foo, fig.cap="my caption" I made it work. Another issue I found was some of the labels were like my_foo_label, so the "_" were bring issues as well. Once again, thank you, @RalfStubner.
    – Sergio Cavaleiro Costa
    Nov 21 at 12:05


















0














I am currently doing my thesis in Rmarkdown, and I have some citation I need in figure captions. I found a similar question in this page, yet the answer refers to the bookdown. In my case, I am using a .bib file.



My issue is that I have the thesis almost all written and the change to bookdown will probably bring errors which will be hard to debug now.



I have in the chunk:



{r yPlus, echo=FALSE, fig.cap="\label{fig:yPlus}Tipo de escoamento dado pela distânica à parede (adaptado de \cite{Versteeg:2007aa}).", fig.align="center"}


but when I run the Rmarkdown, I get [?] in the citation. I have tried citep as well, but it raises an error.



Is there a way to work around this issue without many complications? I am not very comfortable with all this yet.



Thank you all for the help.










share|improve this question
























  • You can change to bookdown with minimal interruption by using bookdown::pdf_document2 instead of pdf_document as output format. I would give this a try first.
    – Ralf Stubner
    Nov 20 at 20:07










  • Thank you, Ralf, for the suggestion. I have tried to perform the change, but it has started raising errors. I am afraid it will not be an easy change.
    – Sergio Cavaleiro Costa
    Nov 21 at 10:24










  • Great that you found a solution. Care to add it as an answer instead of comment?
    – Ralf Stubner
    Nov 21 at 12:01










  • I have made it figure out what was the problem. For further reference, I was referring to figures in the chunk using fig.cap="\label{foo} my caption". When I have passed all to the r foo, fig.cap="my caption" I made it work. Another issue I found was some of the labels were like my_foo_label, so the "_" were bring issues as well. Once again, thank you, @RalfStubner.
    – Sergio Cavaleiro Costa
    Nov 21 at 12:05
















0












0








0







I am currently doing my thesis in Rmarkdown, and I have some citation I need in figure captions. I found a similar question in this page, yet the answer refers to the bookdown. In my case, I am using a .bib file.



My issue is that I have the thesis almost all written and the change to bookdown will probably bring errors which will be hard to debug now.



I have in the chunk:



{r yPlus, echo=FALSE, fig.cap="\label{fig:yPlus}Tipo de escoamento dado pela distânica à parede (adaptado de \cite{Versteeg:2007aa}).", fig.align="center"}


but when I run the Rmarkdown, I get [?] in the citation. I have tried citep as well, but it raises an error.



Is there a way to work around this issue without many complications? I am not very comfortable with all this yet.



Thank you all for the help.










share|improve this question















I am currently doing my thesis in Rmarkdown, and I have some citation I need in figure captions. I found a similar question in this page, yet the answer refers to the bookdown. In my case, I am using a .bib file.



My issue is that I have the thesis almost all written and the change to bookdown will probably bring errors which will be hard to debug now.



I have in the chunk:



{r yPlus, echo=FALSE, fig.cap="\label{fig:yPlus}Tipo de escoamento dado pela distânica à parede (adaptado de \cite{Versteeg:2007aa}).", fig.align="center"}


but when I run the Rmarkdown, I get [?] in the citation. I have tried citep as well, but it raises an error.



Is there a way to work around this issue without many complications? I am not very comfortable with all this yet.



Thank you all for the help.







latex r-markdown caption citations






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited Nov 20 at 18:33

























asked Nov 20 at 16:30









Sergio Cavaleiro Costa

85




85












  • You can change to bookdown with minimal interruption by using bookdown::pdf_document2 instead of pdf_document as output format. I would give this a try first.
    – Ralf Stubner
    Nov 20 at 20:07










  • Thank you, Ralf, for the suggestion. I have tried to perform the change, but it has started raising errors. I am afraid it will not be an easy change.
    – Sergio Cavaleiro Costa
    Nov 21 at 10:24










  • Great that you found a solution. Care to add it as an answer instead of comment?
    – Ralf Stubner
    Nov 21 at 12:01










  • I have made it figure out what was the problem. For further reference, I was referring to figures in the chunk using fig.cap="\label{foo} my caption". When I have passed all to the r foo, fig.cap="my caption" I made it work. Another issue I found was some of the labels were like my_foo_label, so the "_" were bring issues as well. Once again, thank you, @RalfStubner.
    – Sergio Cavaleiro Costa
    Nov 21 at 12:05




















  • You can change to bookdown with minimal interruption by using bookdown::pdf_document2 instead of pdf_document as output format. I would give this a try first.
    – Ralf Stubner
    Nov 20 at 20:07










  • Thank you, Ralf, for the suggestion. I have tried to perform the change, but it has started raising errors. I am afraid it will not be an easy change.
    – Sergio Cavaleiro Costa
    Nov 21 at 10:24










  • Great that you found a solution. Care to add it as an answer instead of comment?
    – Ralf Stubner
    Nov 21 at 12:01










  • I have made it figure out what was the problem. For further reference, I was referring to figures in the chunk using fig.cap="\label{foo} my caption". When I have passed all to the r foo, fig.cap="my caption" I made it work. Another issue I found was some of the labels were like my_foo_label, so the "_" were bring issues as well. Once again, thank you, @RalfStubner.
    – Sergio Cavaleiro Costa
    Nov 21 at 12:05


















You can change to bookdown with minimal interruption by using bookdown::pdf_document2 instead of pdf_document as output format. I would give this a try first.
– Ralf Stubner
Nov 20 at 20:07




You can change to bookdown with minimal interruption by using bookdown::pdf_document2 instead of pdf_document as output format. I would give this a try first.
– Ralf Stubner
Nov 20 at 20:07












Thank you, Ralf, for the suggestion. I have tried to perform the change, but it has started raising errors. I am afraid it will not be an easy change.
– Sergio Cavaleiro Costa
Nov 21 at 10:24




Thank you, Ralf, for the suggestion. I have tried to perform the change, but it has started raising errors. I am afraid it will not be an easy change.
– Sergio Cavaleiro Costa
Nov 21 at 10:24












Great that you found a solution. Care to add it as an answer instead of comment?
– Ralf Stubner
Nov 21 at 12:01




Great that you found a solution. Care to add it as an answer instead of comment?
– Ralf Stubner
Nov 21 at 12:01












I have made it figure out what was the problem. For further reference, I was referring to figures in the chunk using fig.cap="\label{foo} my caption". When I have passed all to the r foo, fig.cap="my caption" I made it work. Another issue I found was some of the labels were like my_foo_label, so the "_" were bring issues as well. Once again, thank you, @RalfStubner.
– Sergio Cavaleiro Costa
Nov 21 at 12:05






I have made it figure out what was the problem. For further reference, I was referring to figures in the chunk using fig.cap="\label{foo} my caption". When I have passed all to the r foo, fig.cap="my caption" I made it work. Another issue I found was some of the labels were like my_foo_label, so the "_" were bring issues as well. Once again, thank you, @RalfStubner.
– Sergio Cavaleiro Costa
Nov 21 at 12:05



















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